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Table 3 SNPs involved in meQTLs found in the GWAS catalog

From: Identifying causal models between genetically regulated methylation patterns and gene expression in healthy colon tissue

  GWAS Normal Adjacent Tumor
Traits 1722 48 (3%) 19 (1%) 15 (1%)
SNPs 48,881 64 (0.1%) 26 (0%) 15 (0%)
Age at menopause 84 1 (1%) 1 (1%) 0 (0%)
Alzheimer's disease (late onset) 55 1 (2%) 1 (2%) 1 (2%)
Asthma 206 2 (1%) 0 (0%) 1 (0%)
Asthma or allergic disease (pleiotropy) 36 1 (3%) 0 (0%) 0 (0%)
Blood metabolite levels 195 1 (1%) 1 (1%) 0 (0%)
Blood protein levels 2772 10 (0%) 7 (0%) 2 (0%)
Blood urea nitrogen levels 111 1 (1%) 0 (0%) 0 (0%)
Childhood ear infection 19 2 (11%) 2 (11%) 2 (11%)
Chronic lymphocytic leukemia 73 1 (1%) 0 (0%) 1 (1%)
Circulating chemerin levels 4 4 (100%) 0 (0%) 0 (0%)
Colorectal cancer 116 3 (3%) 1 (1%) 1 (1%)
Colorectal cancer or advanced adenoma 94 1 (1%) 0 (0%) 0 (0%)
Drug-induced liver injury (amoxicillin-clavulanate) 2 1 (50%) 1 (50%) 0 (0%)
Educational attainment (MTAG) 1320 1 (0%) 0 (0%) 0 (0%)
Eosinophil percentage of granulocytes 179 1 (1%) 1 (1%) 1 (1%)
Hair color 449 1 (0%) 0 (0%) 0 (0%)
Heart rate response to exercise 20 1 (5%) 1 (5%) 1 (5%)
Heel bone mineral density 2262 1 (0%) 0 (0%) 0 (0%)
High density lipoprotein cholesterol levels 306 2 (1%) 0 (0%) 0 (0%)
Highest math class taken (MTAG) 1084 1 (0%) 0 (0%) 0 (0%)
Intraocular pressure 512 2 (0%) 0 (0%) 0 (0%)
Liver enzyme levels 9 1 (11%) 0 (0%) 0 (0%)
Liver enzyme levels (gamma-glutamyl transferase) 26 2 (8%) 2 (8%) 1 (4%)
Lumiracoxib-related liver injury 1 1 (100%) 0 (0%) 0 (0%)
Mean platelet volume 323 1 (0%) 0 (0%) 0 (0%)
Medication use (adrenergics, inhalants) 55 1 (2%) 0 (0%) 0 (0%)
Menopause (age at onset) 63 1 (2%) 1 (2%) 0 (0%)
Metabolite levels 66 2 (3%) 0 (0%) 0 (0%)
Metabolite levels (small molecules and protein measures) 32 1 (3%) 0 (0%) 0 (0%)
Multiple sclerosis 158 1 (1%) 0 (0%) 0 (0%)
Multiple sclerosis (OCB status) 6 2 (33%) 1 (17%) 1 (17%)
Oligoclonal band status in multiple sclerosis 1 1 (100%) 1 (100%) 1 (100%)
Plasma homocysteine levels (post-methionine load test) 5 1 (20%) 1 (20%) 0 (0%)
Platelet count 323 1 (0%) 0 (0%) 0 (0%)
Plateletcrit 258 1 (0%) 0 (0%) 0 (0%)
Pulse pressure 747 1 (0%) 0 (0%) 0 (0%)
Red cell distribution width 821 1 (0%) 0 (0%) 0 (0%)
S-phenylmercapturic acid levels in smokers 1 1 (100%) 0 (0%) 0 (0%)
Serum metabolite levels 76 1 (1%) 1 (1%) 0 (0%)
Systemic lupus erythematosus 195 1 (1%) 1 (1%) 1 (1%)
Systolic blood pressure 1393 1 (0%) 0 (0%) 0 (0%)
Triglyceride levels in current drinkers 39 1 (3%) 0 (0%) 0 (0%)
Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction 55 1 (2%) 0 (0%) 0 (0%)
Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction 55 1 (2%) 0 (0%) 0 (0%)
Type 1 diabetes 87 1 (1%) 0 (0%) 1 (1%)
Type 2 diabetes 352 1 (0%) 1 (0%) 1 (0%)
Urinary 1,3-butadiene metabolite levels in smokers 2 2 (100%) 1 (50%) 1 (50%)
White blood cell count 854 2 (0%) 1 (0%) 0 (0%)